I'm a big fan of Evernote as a research tool to use alongside EndNote. They are both databases. Evernote is good for keeping track of the messy stuff you start with, whereas EndNote is good for the accurate detail you need at the finish.
Evernote has just improved its PDF functionality: Search results will be highlighted inside of PDFs, you can easily drag PDFs out of Evernote, and you can even copy text.
Cool.
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